Research workbench
Streptococcus agalactiae gntr
Analyse Streptococcus agalactiae gntr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AZ6
- Type
- protein
- Length
- 414 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gntr family transcriptional regulator
- UniProt
- X5K3J9
- Pockets
- 6 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gntr family transcriptional regulator | protein | 209 | 71% helix, 4% strand | X5K3J9 |
| B | Gntr family transcriptional regulator | protein | 205 | 71% helix, 4% strand | X5K3J9 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.63 | 0.81 | 28 | empty |
| 2 | 387 | 0.58 | 0.75 | 54 | empty |
| 3 | 328 | 0.54 | 0.74 | 48 | empty |
| 4 | 129 | 0.46 | 0.78 | 19 | empty |
| 5 | 69 | 0.39 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1828 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 6AZ6 · Streptococcus agalactiae GntR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X5K3J9
- Elsewhere: RCSB PDB 6AZ6 · PDBe 6AZ6 · UniProt X5K3J9
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