Research workbench
Exploring cystine dense peptide space to open a unique molecular toolbox
Analyse Exploring cystine dense peptide space to open a unique molecular toolbox in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ATY
- Type
- protein
- Length
- 38 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Venom protein 51.1
- UniProt
- P0CJ17
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Venom protein 51.1 | protein | 38 | 26% helix, 42% strand | P0CJ17 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 6ATY · Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox · the same entry in another collection · chain A against A, TM-score 1.00
- P0CJ17 · AlphaFold monomer V2.0 prediction for venom protein 51.1 (P0CJ17) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CJ17
- Elsewhere: RCSB PDB 6ATY · PDBe 6ATY · UniProt P0CJ17
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