Research workbench
Crystal structure of Z-DNA with 6-fold TWINNING_Z4B
Analyse Crystal structure of Z-DNA with 6-fold TWINNING_Z4B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AQX
- Type
- DNA
- Length
- 48 nucleotides
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | dna | 6 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 572 | 0.66 | 0.78 | 34 | empty |
| 2 | 61 | 0.25 | 0.73 | 11 | empty |
Interfaces
10 interfaces between chains.
- C–D · 328 Ų buried · 31 hydrogen bonds · nucleic-nucleic
- A–B · 327 Ų buried · 31 hydrogen bonds · nucleic-nucleic
- G–H · 327 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- E–F · 327 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- C–F · 145 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 6AQX · Crystal Structure of Z-DNA with 6-fold Twinning_Z4B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6AQX · PDBe 6AQX
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