Research workbench
Crystal structure of Z-DNA with 6-fold TWINNING_Z3B
Analyse Crystal structure of Z-DNA with 6-fold TWINNING_Z3B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AQV
- Type
- DNA
- Length
- 36 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | dna | 6 | — | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.56 | 0.76 | 29 | empty |
Interfaces
7 interfaces between chains.
- E–F · 328 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- A–B · 325 Ų buried · 23 hydrogen bonds · nucleic-nucleic
- C–D · 319 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- B–E · 131 Ų buried · 1 hydrogen bond · nucleic-nucleic
- D–E · 125 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 6AQV · Crystal Structure of Z-DNA with 6-fold Twinning_Z3B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6AQV · PDBe 6AQV
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