Research workbench
Crystal structure of PPK2 class III in complex with ADP from cytophaga hutchinsonii atcc 33406
Analyse Crystal structure of PPK2 class III in complex with ADP from cytophaga… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AN9
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLYPHOSPHATE:AMP phosphotransferase
- EC
- 2.7.4.-
- UniProt
- Q11YW6
- Ligands
- ADP
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLYPHOSPHATE:AMP phosphotransferase (EC 2.7.4.-) | protein | 296 | 56% helix, 11% strand | Q11YW6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 356 | 0.64 | 0.79 | 47 | ADP |
| 2 | 71 | 0.48 | 0.83 | 17 | GOL |
Compared structures
- 6AN9 · Crystal structure of PPk2 class III in complex with ADP from Cytophaga hutchinsonii ATCC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11YW6
- Elsewhere: RCSB PDB 6AN9 · PDBe 6AN9 · UniProt Q11YW6
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