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Crystal structure of slmap-SIKE1 complex

Analyse Crystal structure of slmap-SIKE1 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6AKM
Type
protein
Length
93 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Suppressor of ikbke 1; Sarcolemmal membrane-associated protein
UniProt
Q9BRV8, Q14BN4

Structure

x-ray diffraction · 2 distinct chains · 91% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASuppressor of ikbke 1protein4791% helix, 0% strandQ9BRV8
BSarcolemmal membrane-associated proteinprotein4691% helix, 0% strandQ14BN4

Ligands and binding sites

  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 969 Ų buried · 3 hydrogen bonds · protein-protein

Compared structures

  • 6AKM · Crystal structure of SLMAP-SIKE1 complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q14BN4 · AlphaFold monomer V2.0 prediction for sarcolemmal membrane-associated protein (Q14BN4) · a predicted model of the same protein · chain B against A, TM-score 0.89
  • Q9BRV8 · AlphaFold monomer V2.0 prediction for suppressor of ikbke 1 (Q9BRV8) · a predicted model of the same protein · chain A against A, TM-score 0.87

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