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Crystal structure of P-nitrophenol 4-monooxygenase pnpa from pseudomonas putida dll-E4
Analyse Crystal structure of P-nitrophenol 4-monooxygenase pnpa from pseudomonas putida… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AIO
- Type
- protein
- Length
- 775 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pnpa
- UniProt
- C6FI48
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pnpa | protein | 388 | 38% helix, 29% strand | C6FI48 |
| B | Pnpa | protein | 387 | 39% helix, 29% strand | C6FI48 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 966 | 0.77 | 0.79 | 100 | empty |
| 2 | 479 | 0.74 | 0.83 | 64 | empty |
| 3 | 137 | 0.62 | 0.85 | 25 | empty |
| 4 | 144 | 0.59 | 0.82 | 20 | empty |
| 5 | 128 | 0.42 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 562 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6AIO · Crystal structure of p-nitrophenol 4-monooxygenase PnpA from Pseudomonas putida DLL-E4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6FI48
- Elsewhere: RCSB PDB 6AIO · PDBe 6AIO · UniProt C6FI48
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