Research workbench
Dj-1 with compound 7
Analyse Dj-1 with compound 7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AFE
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PROTEIN/NUCLEIC acid deglycase dj-1
- EC
- 3.1.2.-, 3.5.1.-, 3.5.1.124
- UniProt
- Q99497
- Ligands
- 72T, CL
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PROTEIN/NUCLEIC acid deglycase dj-1 (EC 3.1.2.-, 3.5.1.-, 3.5.1.124) | protein | 187 | 43% helix, 21% strand | Q99497 |
Ligands and binding sites
- 72T · 7-(trifluoromethyl)-1~{H}-indole-2,3-dione · ligand · 2 copies · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6AFE · DJ-1 with compound 7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99497
- Elsewhere: RCSB PDB 6AFE · PDBe 6AFE · UniProt Q99497
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