Research workbench
Crystal structure of escherichia COLI alkanesulfonate monooxygenase ssud at 2.3 a resolution
Analyse Crystal structure of escherichia COLI alkanesulfonate monooxygenase ssud at 2.3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1M41
- Type
- protein
- Length
- 656 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FMNH2-dependent alkanesulfonate monooxygenase
- EC
- 1.1.-.-
- UniProt
- P80645
- Pockets
- 11 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | FMNH2-dependent alkanesulfonate monooxygenase (EC 1.1.-.-) | protein | 328 | 38% helix, 20% strand | P80645 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.76 | 0.96 | 24 | empty |
| 2 | 79 | 0.73 | 0.97 | 19 | empty |
| 3 | 551 | 0.69 | 0.78 | 55 | empty |
| 4 | 506 | 0.69 | 0.79 | 41 | empty |
| 5 | 453 | 0.66 | 0.78 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 1995 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 1M41 · Crystal structure of Escherichia coli alkanesulfonate monooxygenase SsuD at 2.3 A… · the same entry in another collection · chain A against A, TM-score 1.00
- P80645 · AlphaFold monomer V2.0 prediction for alkanesulfonate monooxygenase (P80645) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80645
- Elsewhere: RCSB PDB 1M41 · PDBe 1M41 · UniProt P80645
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