Research workbench
Crystal structure of citrate synthase (MSED_0281) from metallosphaera sedula in complex with acetyl-CoA
Analyse Crystal structure of citrate synthase (MSED_0281) from metallosphaera sedula in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ABW
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Citrate synthase
- EC
- 2.3.3.16
- UniProt
- A4YDF6
- Ligands
- ACO
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Citrate synthase (EC 2.3.3.16) | protein | 369 | 63% helix, 3% strand | A4YDF6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 295 | 0.60 | 0.79 | 38 | GOL, ACO |
| 2 | 102 | 0.36 | 0.74 | 16 | empty |
Compared structures
- 6ABW · Crystal structure of citrate synthase (Msed_0281) from Metallosphaera sedula in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4YDF6
- Elsewhere: RCSB PDB 6ABW · PDBe 6ABW · UniProt A4YDF6
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