Research workbench
Crystal form II of perfringolysin O
Analyse Crystal form II of perfringolysin O in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1M3J
- Type
- protein
- Length
- 942 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Perfringolysin O
- UniProt
- P19995
- Pockets
- 10 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Perfringolysin O | protein | 471 | 20% helix, 39% strand | P19995 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.56 | 0.81 | 26 | empty |
| 2 | 142 | 0.54 | 0.81 | 29 | empty |
| 3 | 126 | 0.53 | 0.81 | 29 | empty |
| 4 | 128 | 0.53 | 0.81 | 29 | empty |
| 5 | 176 | 0.53 | 0.79 | 29 | empty |
Compared structures
- 1M3J · CRYSTAL form II of perfringolysin O · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19995
- Elsewhere: RCSB PDB 1M3J · PDBe 1M3J · UniProt P19995
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