Research workbench
Crystal structure of fission yeast inner membrane protein BQT4 in complex with SAD1
Analyse Crystal structure of fission yeast inner membrane protein BQT4 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6A6W
- Type
- protein
- Length
- 152 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bouquet formation protein 4; Spindle pole body-associated protein SAD1
- UniProt
- O60158, Q09825
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bouquet formation protein 4 | protein | 135 | 38% helix, 22% strand | O60158 |
| B | Spindle pole body-associated protein SAD1 | protein | 17 | 82% helix, 0% strand | Q09825 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.38 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 613 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6A6W · Crystal structure of fission yeast inner membrane protein Bqt4 in complex with Sad1 · the same entry in another collection · chain A against A, TM-score 1.00
- O60158 · AlphaFold monomer V2.0 prediction for bouquet formation protein 4 (O60158) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q09825 · AlphaFold monomer V2.0 prediction for spindle pole body-associated protein SAD1 (Q09825) · a predicted model of the same protein · chain B against A, TM-score 0.53
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60158
- Every structure of UniProt Q09825
- Elsewhere: RCSB PDB 6A6W · PDBe 6A6W · UniProt O60158 · UniProt Q09825
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