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The crystal structure of rat calcium-dependent activator protein for secretion (caps) damh domain
Analyse The crystal structure of rat calcium-dependent activator protein for secretion… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6A68
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-dependent secretion activator 1
- UniProt
- Q62717
- Ligands
- K
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-dependent secretion activator 1 | protein | 162 | 69% helix, 2% strand | Q62717 |
Ligands and binding sites
- K · Potassium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.28 | 0.74 | 12 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 6A68 · the crystal structure of rat calcium-dependent activator protein for secretion (CAPS)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q62717 · AlphaFold monomer V2.0 prediction for calcium-dependent secretion activator 1 (Q62717) · a predicted model of the same protein · chain A against A, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q62717
- Elsewhere: RCSB PDB 6A68 · PDBe 6A68 · UniProt Q62717
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