Research workbench
Crystal structure of a synthase 2 from santalum album in complex with LIG2
Analyse Crystal structure of a synthase 2 from santalum album in complex with LIG2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6A2C
- Type
- protein
- Length
- 1,028 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sesquisabinene B synthase 2
- UniProt
- A0A0A0RCB5
- Ligands
- FPP, MG
- Pockets
- 15 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sesquisabinene B synthase 2 | protein | 518 | 72% helix, 1% strand | A0A0A0RCB5 |
| B | Sesquisabinene B synthase 2 | protein | 510 | 73% helix, 1% strand | A0A0A0RCB5 |
Ligands and binding sites
- FPP · Farnesyl diphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 918 | 0.79 | 0.81 | 63 | empty |
| 2 | 606 | 0.72 | 0.80 | 69 | FPP, MG |
| 3 | 471 | 0.71 | 0.81 | 49 | FPP, MG |
| 4 | 371 | 0.70 | 0.82 | 41 | empty |
| 5 | 337 | 0.69 | 0.82 | 38 | empty |
Interfaces
1 interface between chains.
- A–B · 1002 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6A2C · Crystal structure of a synthase 2 from santalum album in complex with lig2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0RCB5
- Elsewhere: RCSB PDB 6A2C · PDBe 6A2C · UniProt A0A0A0RCB5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.