Research workbench
Redox-sensing transcriptional repressor rex
Analyse Redox-sensing transcriptional repressor rex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZZ7
- Type
- protein
- Length
- 409 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Redox-sensing transcriptional repressor rex 1
- UniProt
- Q9WY16
- Ligands
- NAI
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Redox-sensing transcriptional repressor rex 1 | protein | 206 | 52% helix, 16% strand | Q9WY16 |
| B | Redox-sensing transcriptional repressor rex 1 | protein | 203 | 52% helix, 20% strand | Q9WY16 |
Ligands and binding sites
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 468 | 0.68 | 0.79 | 59 | NAI |
| 2 | 876 | 0.68 | 0.74 | 72 | empty |
| 3 | 54 | 0.35 | 0.78 | 12 | empty |
| 4 | 60 | 0.33 | 0.76 | 12 | empty |
| 5 | 54 | 0.32 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 2403 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WY16
- Elsewhere: RCSB PDB 5ZZ7 · PDBe 5ZZ7 · UniProt Q9WY16
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