Research workbench
Crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial F1-ATPase
Analyse Crystal structure of the gamma - epsilon complex of photosynthetic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZWL
- Type
- protein
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase epsilon chain; ATP synthase gamma chain
- UniProt
- Q8DLG7, Q8DLU1
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | ATP synthase epsilon chain | protein | 138 | 33% helix, 44% strand | Q8DLG7 |
| G | ATP synthase gamma chain | protein | 254 | 48% helix, 21% strand | Q8DLU1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 496 | 0.64 | 0.77 | 45 | empty |
| 2 | 278 | 0.61 | 0.79 | 37 | empty |
| 3 | 65 | 0.31 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- E–G · 1400 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5ZWL · Crystal structure of the gamma - epsilon complex of photosynthetic cyanobacterial… · the same entry in another collection · chain E against E, TM-score 1.00
- Q8DLU1 · AlphaFold monomer V2.0 prediction for ATP synthase gamma chain (Q8DLU1) · a predicted model of the same protein · chain G against A, TM-score 0.92
- Q8DLG7 · AlphaFold monomer V2.0 prediction for ATP synthase epsilon chain (Q8DLG7) · a predicted model of the same protein · chain E against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DLG7
- Every structure of UniProt Q8DLU1
- Elsewhere: RCSB PDB 5ZWL · PDBe 5ZWL · UniProt Q8DLG7 · UniProt Q8DLU1
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