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Crystal structure of pyridoxal kinase (pdxk) from salmonella typhimurium in complex with ADP, pl-linked to LYS233 via schiff base in protomer a and the product (plp) in protomer B
Analyse Crystal structure of pyridoxal kinase (pdxk) from salmonella typhimurium in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZWA
- Type
- protein
- Length
- 530 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0M0PWM4
- Ligands
- ADP, PLP, MG, SO4, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 264 | — | A0A0M0PWM4 |
| B | — | protein | 266 | — | A0A0M0PWM4 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- PLP · Pyridoxal-5'-phosphate · ligand · chains B
- MG · Magnesium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- PO4 · Phosphate ion · ion · chains B
- EDO · 1,2-ethanediol · additive · 15 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZWA · Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0M0PWM4
- Elsewhere: RCSB PDB 5ZWA · PDBe 5ZWA · UniProt A0A0M0PWM4
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