Research workbench
Structure of semet-spaimr
Analyse Structure of semet-spaimr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZW5
- Type
- protein
- Length
- 780 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aimr transcriptional regulator
- UniProt
- O64094
- Pockets
- 7 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aimr transcriptional regulator | protein | 390 | 71% helix, 0% strand | O64094 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 756 | 0.78 | 0.82 | 46 | empty |
| 2 | 761 | 0.78 | 0.81 | 47 | empty |
| 3 | 60 | 0.38 | 0.80 | 14 | empty |
| 4 | 57 | 0.36 | 0.79 | 15 | empty |
| 5 | 101 | 0.35 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 789 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5ZW5 · Structure of SeMet-spAimR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64094
- Elsewhere: RCSB PDB 5ZW5 · PDBe 5ZW5 · UniProt O64094
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