Research workbench
Crystal structure of yeast PCNA in complex with N24 peptide
Analyse Crystal structure of yeast PCNA in complex with N24 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZUT
- Type
- protein
- Length
- 273 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Proliferating cell nuclear antigen; N24
- UniProt
- P15873, Q5T4P3
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proliferating cell nuclear antigen | protein | 255 | 18% helix, 36% strand | P15873 |
| E | N24 | protein | 18 | 17% helix, 0% strand | Q5T4P3 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 303 | 0.71 | 0.85 | 43 | empty |
| 2 | 73 | 0.51 | 0.85 | 17 | empty |
| 3 | 62 | 0.40 | 0.80 | 19 | empty |
Interfaces
1 interface between chains.
- A–E · 719 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5ZUT · Crystal Structure of Yeast PCNA in Complex with N24 Peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15873
- Every structure of UniProt Q5T4P3
- Elsewhere: RCSB PDB 5ZUT · PDBe 5ZUT · UniProt P15873 · UniProt Q5T4P3
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