Research workbench
P domain of GII.17-2014/15
Analyse P domain of GII.17-2014/15 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZUS
- Type
- protein
- Length
- 611 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1
- UniProt
- A0A1C9I7R1
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 305 | 5% helix, 34% strand | A0A1C9I7R1 |
| B | VP1 | protein | 306 | 5% helix, 34% strand | A0A1C9I7R1 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 594 | 0.79 | 0.85 | 86 | empty |
| 2 | 161 | 0.67 | 0.87 | 27 | empty |
| 3 | 133 | 0.44 | 0.77 | 24 | empty |
| 4 | 91 | 0.43 | 0.79 | 19 | empty |
| 5 | 138 | 0.42 | 0.75 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1814 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 5ZUS · P domain of GII.17-2014/15 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1C9I7R1
- Elsewhere: RCSB PDB 5ZUS · PDBe 5ZUS · UniProt A0A1C9I7R1
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