Research workbench
Small heat shock protein from mycobacterium marinum M : form-3
Analyse Small heat shock protein from mycobacterium marinum M : form-3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZUL
- Type
- protein
- Length
- 599 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small heat shock protein
- UniProt
- B2HF11
- Pockets
- 9 · best druggability 0.73
Structure
x-ray diffraction · 6 distinct chains · 0% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small heat shock protein | protein | 95 | 0% helix, 46% strand | B2HF11 |
| B | Small heat shock protein | protein | 99 | 0% helix, 42% strand | B2HF11 |
| C | Small heat shock protein | protein | 99 | 0% helix, 47% strand | B2HF11 |
| D | Small heat shock protein | protein | 104 | 0% helix, 41% strand | B2HF11 |
| E | Small heat shock protein | protein | 91 | 0% helix, 53% strand | B2HF11 |
| F | Small heat shock protein | protein | 111 | 0% helix, 42% strand | B2HF11 |
Pockets
9 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 643 | 0.73 | 0.80 | 76 | empty |
| 2 | 421 | 0.69 | 0.80 | 70 | empty |
| 3 | 623 | 0.66 | 0.76 | 78 | empty |
| 4 | 398 | 0.65 | 0.79 | 58 | empty |
| 5 | 427 | 0.64 | 0.78 | 55 | empty |
Interfaces
8 interfaces between chains.
- E–F · 908 Ų buried · 19 hydrogen bonds · protein-protein
- B–D · 903 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 533 Ų buried · 4 hydrogen bonds · protein-protein
- D–F · 399 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 256 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5ZUL · Small heat shock protein from Mycobacterium marinum M : Form-3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2HF11
- Elsewhere: RCSB PDB 5ZUL · PDBe 5ZUL · UniProt B2HF11
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