Research workbench
Apo structure of tetr family transcription regulator LMO2088 of listeria monocytogenes egde
Analyse Apo structure of tetr family transcription regulator LMO2088 of listeria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZTC
- Type
- protein
- Length
- 394 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LMO2088 protein
- UniProt
- Q8Y5H4
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | LMO2088 protein | protein | 197 | 79% helix, 0% strand | Q8Y5H4 |
Ligands and binding sites
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 832 | 0.80 | 0.82 | 73 | 1PE |
| 2 | 302 | 0.79 | 0.90 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 1445 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5ZTC · Apo structure of TetR family transcription regulator Lmo2088 of Listeria monocytogenes… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y5H4
- Elsewhere: RCSB PDB 5ZTC · PDBe 5ZTC · UniProt Q8Y5H4
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