Research workbench
Small heat shock protein from M. MARINUM:FORM-1
Analyse Small heat shock protein from M. MARINUM:FORM-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZS3
- Type
- protein
- Length
- 118 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molecular chaperone (small heat shock protein); Gly-arg-leu-leu-pro
- UniProt
- B2HF11
- Ligands
- NA, CL, SO4
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Molecular chaperone (small heat shock protein) | protein | 113 | 3% helix, 47% strand | B2HF11 |
| U | Gly-arg-leu-leu-pro | protein | 5 | 0% helix, 40% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, U
- CL · Chloride ion · ion · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–U · 291 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5ZS3 · Small heat shock protein from M. marinum:Form-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2HF11
- Elsewhere: RCSB PDB 5ZS3 · PDBe 5ZS3 · UniProt B2HF11
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