Research workbench
Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the cefotaxime bound form
Analyse Crystal structure of penicillin-binding protein D2 from listeria monocytogenes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZQD
- Type
- protein
- Length
- 1,976 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8Y3M3
- Ligands
- CEF
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | — | protein | 247 | — | Q8Y3M3 |
Ligands and binding sites
- CEF · CEFOTAXIME, C3' cleaved, open, bound form · ligand · 12 copies · chains A, B, C, D, E, F, G, H
- GOL · Glycerol · additive · 11 copies · chains A, B, F, C, D, E, H, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZQD · Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y3M3
- Elsewhere: RCSB PDB 5ZQD · PDBe 5ZQD · UniProt Q8Y3M3
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