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Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the apo form

Analyse Crystal structure of penicillin-binding protein D2 from listeria monocytogenes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ZQA
Type: protein
Length: 248 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8Y3M3
Ligands: MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	248	—	Q8Y3M3

Ligands and binding sites

MG · Magnesium ion · metal · 3 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5ZQA · Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the apo… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8Y3M3
Elsewhere: RCSB PDB 5ZQA · PDBe 5ZQA · UniProt Q8Y3M3

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