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Copper amine oxidase from arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 9 at 288 K (1)
Analyse Copper amine oxidase from arthrobacter globiformis anaerobically reduced by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZPQ
- Type
- protein
- Length
- 1,240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylethylamine oxidase
- EC
- 1.4.3.21
- UniProt
- P46881
- Ligands
- HY1, NA, CU
- Pockets
- 15 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phenylethylamine oxidase (EC 1.4.3.21) | protein | 620 | 13% helix, 41% strand | P46881 |
Ligands and binding sites
- HY1 · Phenylacetaldehyde · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 3 copies · chains A, B
- CU · Copper (II) ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 443 | 0.68 | 0.80 | 41 | empty |
| 2 | 337 | 0.68 | 0.82 | 57 | empty |
| 3 | 272 | 0.62 | 0.80 | 40 | empty |
| 4 | 186 | 0.54 | 0.78 | 24 | HY1 |
| 5 | 141 | 0.53 | 0.80 | 22 | HY1 |
Interfaces
1 interface between chains.
- A–B · 695 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide, 2 modified (disulfide, nonstandard).
Compared structures
- 5ZPQ · Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46881
- Elsewhere: RCSB PDB 5ZPQ · PDBe 5ZPQ · UniProt P46881
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