Research workbench
Structure of the L-a virus
Analyse Structure of the L-a virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1M1C
- Type
- protein
- Length
- 1,302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major coat protein
- UniProt
- P32503
- Pockets
- 16 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major coat protein | protein | 651 | 25% helix, 22% strand | P32503 |
Pockets
16 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 641 | 0.76 | 0.82 | 61 | empty |
| 2 | 361 | 0.73 | 0.85 | 43 | empty |
| 3 | 445 | 0.73 | 0.83 | 43 | empty |
| 4 | 252 | 0.68 | 0.84 | 38 | empty |
| 5 | 198 | 0.65 | 0.84 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 1459 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 1M1C · Structure of the L-A virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32503
- Elsewhere: RCSB PDB 1M1C · PDBe 1M1C · UniProt P32503
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