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Crystal structure of bourbon virus envelope glycoprotein at PH8.0

Analyse Crystal structure of bourbon virus envelope glycoprotein at PH8.0 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ZL2
Type: protein
Length: 1,164 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Envelope glycoprotein
UniProt: A0A140H4W8
Pockets: 13 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Envelope glycoprotein	protein	388	21% helix, 33% strand	A0A140H4W8

Pockets

13 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.47	0.76	22	empty
2	143	0.46	0.76	16	empty
3	95	0.44	0.80	27	empty
4	163	0.44	0.75	22	empty
5	53	0.34	0.78	14	empty

Interfaces

2 interfaces between chains.

A–B · 164 Å² buried · 1 hydrogen bond · protein-protein
A–C · 164 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 15 disulfide (disulfide).

Compared structures

5ZL2 · Crystal structure of Bourbon virus envelope glycoprotein at pH8.0 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A140H4W8
Elsewhere: RCSB PDB 5ZL2 · PDBe 5ZL2 · UniProt A0A140H4W8

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