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Human group C rotavirus VP8*S recognize type a histo-blood group antigens as ligands

Analyse Human group C rotavirus VP8*S recognize type a histo-blood group antigens as… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ZHG
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer capsid protein VP8*
UniProt: Q82040
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer capsid protein VP8*	protein	162	6% helix, 57% strand	Q82040

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.36	0.76	20	empty

Compared structures

5ZHG · Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q82040
Elsewhere: RCSB PDB 5ZHG · PDBe 5ZHG · UniProt Q82040

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