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Crystal structure of arthrobacter globiformis M30 sugar epimerase which can produce D-allulose from D-fructose
Analyse Crystal structure of arthrobacter globiformis M30 sugar epimerase which can… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZFS
- Type
- protein
- Length
- 585 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-allulose-3-epimerase
- UniProt
- A0A1L7NQ96
- Ligands
- MN
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-allulose-3-epimerase | protein | 291 | 48% helix, 16% strand | A0A1L7NQ96 |
| B | D-allulose-3-epimerase | protein | 294 | 47% helix, 16% strand | A0A1L7NQ96 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- ACT · Acetate ion · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.47 | 0.80 | 15 | empty |
| 2 | 122 | 0.46 | 0.78 | 23 | empty |
| 3 | 98 | 0.38 | 0.76 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1474 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
- 5ZFS · Crystal structure of Arthrobacter globiformis M30 sugar epimerase which can produce… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L7NQ96
- Elsewhere: RCSB PDB 5ZFS · PDBe 5ZFS · UniProt A0A1L7NQ96
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