Research workbench
Crystal structure of sialic acid binding protein from haemophilus ducreyi
Analyse Crystal structure of sialic acid binding protein from haemophilus ducreyi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZA4
- Type
- protein
- Length
- 488 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ABC transporter periplasmic binding protein
- UniProt
- Q7VL18
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ABC transporter periplasmic binding protein | protein | 488 | 32% helix, 23% strand | Q7VL18 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.79 | 0.96 | 24 | empty |
| 2 | 495 | 0.65 | 0.77 | 50 | empty |
| 3 | 102 | 0.47 | 0.80 | 16 | empty |
| 4 | 92 | 0.43 | 0.78 | 20 | empty |
| 5 | 51 | 0.29 | 0.76 | 17 | empty |
Compared structures
- 5ZA4 · Crystal structure of Sialic acid Binding protein from Haemophilus ducreyi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7VL18
- Elsewhere: RCSB PDB 5ZA4 · PDBe 5ZA4 · UniProt Q7VL18
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