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Crystal structure of abundant perithecial protein (app) from neurospora crassa
Analyse Crystal structure of abundant perithecial protein (app) from neurospora crassa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z6D
- Type
- protein
- Length
- 408 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DUF1881 domain-containing protein
- UniProt
- Q7RY31
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DUF1881 domain-containing protein | protein | 204 | 3% helix, 47% strand | Q7RY31 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 462 | 0.64 | 0.77 | 58 | empty |
| 2 | 219 | 0.49 | 0.76 | 26 | empty |
| 3 | 98 | 0.34 | 0.74 | 22 | empty |
| 4 | 67 | 0.31 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 421 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5Z6D · Crystal structure of Abundant Perithecial Protein (APP) from Neurospora crassa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7RY31
- Elsewhere: RCSB PDB 5Z6D · PDBe 5Z6D · UniProt Q7RY31
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