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Crystal structure of bacillus subtilis sugar-binding protein yeso involved in import of rhamnogalacturonan

Analyse Crystal structure of bacillus subtilis sugar-binding protein yeso involved in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Z6C
Type: protein
Length: 376 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative ABC transporter substrate-binding protein yeso
UniProt: O31518
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative ABC transporter substrate-binding protein yeso	protein	376	50% helix, 15% strand	O31518

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	469	0.71	0.81	66	empty
2	136	0.46	0.77	26	empty
3	86	0.43	0.79	23	empty

Compared structures

5Z6C · Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of… · the same entry in another collection · chain A against A, TM-score 1.00
O31518 · AlphaFold monomer V2.0 prediction for putative ABC transporter substrate-binding protein… · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31518
Elsewhere: RCSB PDB 5Z6C · PDBe 5Z6C · UniProt O31518

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