Research workbench
Crystal structure of (S)-allantoin synthase
Analyse Crystal structure of (S)-allantoin synthase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z5M
- Type
- protein
- Length
- 1,089 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted protein
- UniProt
- B7GAW6
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 3 distinct chains · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted protein | protein | 273 | 40% helix, 21% strand | B7GAW6 |
| B | Predicted protein | protein | 272 | 41% helix, 21% strand | B7GAW6 |
| C, D | Predicted protein | protein | 272 | 40% helix, 22% strand | B7GAW6 |
Pockets
20 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.81 | 0.97 | 33 | empty |
| 2 | 1101 | 0.78 | 0.80 | 88 | empty |
| 3 | 1113 | 0.78 | 0.79 | 98 | empty |
| 4 | 106 | 0.68 | 0.91 | 26 | empty |
| 5 | 182 | 0.62 | 0.83 | 33 | empty |
Interfaces
6 interfaces between chains.
- B–D · 2182 Ų buried · 17 hydrogen bonds · protein-protein
- A–C · 2159 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 688 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 669 Ų buried · 7 hydrogen bonds · protein-protein
- A–D · 362 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5Z5M · Crystal structure of (S)-allantoin synthase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7GAW6
- Elsewhere: RCSB PDB 5Z5M · PDBe 5Z5M · UniProt B7GAW6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.