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Structure of tailor in complex with agu RNA

Analyse Structure of tailor in complex with agu RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Z4A
Type: protein + RNA
Length: 354 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*AP*GP*U)-3'); Terminal uridylyltransferase tailor
EC: 2.7.7.52
UniProt: Q9VI58
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	RNA (5'-R(APGP*U)-3')	rna	3	—	—
A	Terminal uridylyltransferase tailor (EC 2.7.7.52)	protein	351	46% helix, 12% strand	Q9VI58

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	265	0.55	0.77	37	empty

Interfaces

1 interface between chains.

B–A · 538 Å² buried · 17 hydrogen bonds · protein-nucleic

Compared structures

5Z4A · Structure of Tailor in complex with AGU RNA · the same entry in another collection · chain B against B, TM-score 1.00
Q9VI58 · AlphaFold monomer V2.0 prediction for terminal uridylyltransferase tailor (Q9VI58) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VI58
Elsewhere: RCSB PDB 5Z4A · PDBe 5Z4A · UniProt Q9VI58

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