Research workbench
Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg - K365A mutant
Analyse Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg - K365A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z24
- Type
- protein
- Length
- 872 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilus assembly protein
- UniProt
- A0A179XFF5
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilus assembly protein | protein | 441 | 10% helix, 45% strand | A0A179XFF5 |
| B | Pilus assembly protein | protein | 431 | 9% helix, 45% strand | A0A179XFF5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 670 | 0.68 | 0.76 | 68 | empty |
| 2 | 633 | 0.67 | 0.76 | 58 | empty |
| 3 | 82 | 0.34 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 4 isopeptide (isopeptide).
Compared structures
- 5Z24 · Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG - K365A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179XFF5
- Elsewhere: RCSB PDB 5Z24 · PDBe 5Z24 · UniProt A0A179XFF5
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