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Structure of ATOSCA3.1 channel

Analyse Structure of ATOSCA3.1 channel in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Z1F
Type: protein
Length: 1,202 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CSC1-like protein ERD4
UniProt: Q9C8G5
Pockets: 20 · best druggability 0.82

Structure

electron microscopy · 1 distinct chain · 63% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	CSC1-like protein ERD4	protein	601	63% helix, 3% strand	Q9C8G5

Pockets

20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1182	0.82	0.83	120	empty
2	1185	0.82	0.83	120	empty
3	981	0.81	0.83	113	empty
4	513	0.80	0.86	56	empty
5	431	0.70	0.81	66	empty

Interfaces

1 interface between chains.

A–B · 1387 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5Z1F · Structure of atOSCA3.1 channel · the same entry in another collection · chain A against A, TM-score 1.00
Q9C8G5 · AlphaFold monomer V2.0 prediction for CSC1-like protein ERD4 (Q9C8G5) · a predicted model of the same protein · chain B against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9C8G5
Elsewhere: RCSB PDB 5Z1F · PDBe 5Z1F · UniProt Q9C8G5

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