Research workbench
Native escherichia COLI L,D-carboxypeptidase a (ldca)
Analyse Native escherichia COLI L,D-carboxypeptidase a (ldca) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z01
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Murein tetrapeptide carboxypeptidase
- EC
- 3.4.17.13
- UniProt
- P76008
- Ligands
- MG
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Murein tetrapeptide carboxypeptidase (EC 3.4.17.13) | protein | 305 | 35% helix, 25% strand | P76008 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.34 | 0.74 | 29 | empty |
Compared structures
- 5Z01 · Native Escherichia coli L,D-carboxypeptidase A (LdcA) · the same entry in another collection · chain A against A, TM-score 1.00
- P76008 · AlphaFold monomer V2.0 prediction for murein tetrapeptide carboxypeptidase (P76008) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76008
- Elsewhere: RCSB PDB 5Z01 · PDBe 5Z01 · UniProt P76008
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.