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Crystal structure of P204 hinb domain
Analyse Crystal structure of P204 hinb domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YZW
- Type
- protein
- Length
- 384 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IFI204
- UniProt
- A0A1Z3MI45
- Pockets
- 5 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | IFI204 | protein | 191 | 14% helix, 48% strand | A0A1Z3MI45 |
| B | IFI204 | protein | 193 | 15% helix, 46% strand | A0A1Z3MI45 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 492 | 0.78 | 0.86 | 47 | empty |
| 2 | 270 | 0.69 | 0.84 | 27 | empty |
| 3 | 66 | 0.65 | 0.94 | 20 | empty |
| 4 | 154 | 0.61 | 0.84 | 18 | empty |
| 5 | 93 | 0.53 | 0.84 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 829 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5YZW · Crystal structure of p204 HINb domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Z3MI45
- Elsewhere: RCSB PDB 5YZW · PDBe 5YZW · UniProt A0A1Z3MI45
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