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Crystal structure analysis of feline serum albumin

Analyse Crystal structure analysis of feline serum albumin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YXE
Type: protein
Length: 572 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serum albumin
UniProt: P49064
Pockets: 10 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 69% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serum albumin	protein	572	69% helix, 0% strand	P49064

Pockets

10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1054	0.84	0.85	113	empty
2	97	0.74	0.95	25	empty
3	132	0.69	0.90	31	empty
4	211	0.62	0.82	28	empty
5	267	0.59	0.78	24	empty

Modifications

Observed in the structure: 17 disulfide (disulfide).

Compared structures

5YXE · Crystal Structure Analysis of feline serum albumin · the same entry in another collection · chain A against A, TM-score 1.00
P49064 · AlphaFold monomer V2.0 prediction for albumin (P49064) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P49064
Elsewhere: RCSB PDB 5YXE · PDBe 5YXE · UniProt P49064

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