Research workbench
Chalcone isomerase from the antarctic vascular plant deschampsia antarctica (DACHI1)
Analyse Chalcone isomerase from the antarctic vascular plant deschampsia antarctica… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YX3
- Type
- protein
- Length
- 428 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chalcone-flavonone isomerase family protein
- UniProt
- G4U3G8
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chalcone-flavonone isomerase family protein | protein | 214 | 42% helix, 29% strand | G4U3G8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 297 | 0.60 | 0.78 | 36 | empty |
| 2 | 126 | 0.41 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1168 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 5YX3 · Chalcone isomerase from the Antarctic vascular plant Deschampsia Antarctica (DaCHI1) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4U3G8
- Elsewhere: RCSB PDB 5YX3 · PDBe 5YX3 · UniProt G4U3G8
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