Research workbench
Archael ruvb-like holiday junction helicase
Analyse Archael ruvb-like holiday junction helicase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YWW
- Type
- protein
- Length
- 485 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleotide binding protein pinc
- UniProt
- F0NID4
- Pockets
- 5 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleotide binding protein pinc | protein | 485 | 38% helix, 29% strand | F0NID4 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 228 | 0.47 | 0.74 | 33 | empty |
| 2 | 110 | 0.44 | 0.77 | 13 | empty |
| 3 | 148 | 0.42 | 0.74 | 26 | empty |
| 4 | 92 | 0.40 | 0.77 | 17 | empty |
| 5 | 59 | 0.29 | 0.74 | 14 | empty |
Compared structures
- 5YWW · Archael RuvB-like Holiday junction helicase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0NID4
- Elsewhere: RCSB PDB 5YWW · PDBe 5YWW · UniProt F0NID4
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