Research workbench
Structure of the ectodomain of pseudorabies virus glycoproten B
Analyse Structure of the ectodomain of pseudorabies virus glycoproten B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YS6
- Type
- protein
- Length
- 572 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prv glycoproten B
- UniProt
- A0A1Q0AKY3
- Pockets
- 3 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prv glycoproten B | protein | 572 | 18% helix, 35% strand | A0A1Q0AKY3 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.50 | 0.77 | 22 | empty |
| 2 | 100 | 0.45 | 0.79 | 18 | empty |
| 3 | 117 | 0.39 | 0.74 | 20 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 5YS6 · Structure of the ectodomain of pseudorabies virus glycoproten B · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q0AKY3
- Elsewhere: RCSB PDB 5YS6 · PDBe 5YS6 · UniProt A0A1Q0AKY3
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