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Rorgamma (263-509) complexed with SRC2 and compound 6

Analyse Rorgamma (263-509) complexed with SRC2 and compound 6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YP6
Type: protein
Length: 251 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nuclear receptor ror-gamma; SRC2
UniProt: P51449
Ligands: 4CX
Pockets: 3 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nuclear receptor ror-gamma	protein	243	73% helix, 4% strand	P51449
B	SRC2	protein	8	75% helix, 0% strand	—

Ligands and binding sites

4CX · N-[3'-cyano-4'-(2-methylpropyl)-2-(trifluoromethyl) biphenyl-4-yl]-2-[4-(ethylsulfonyl)phenyl]acetamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	340	0.82	0.91	37	4CX
2	130	0.47	0.78	19	empty
3	79	0.41	0.79	15	empty

Interfaces

1 interface between chains.

A–B · 491 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5YP6 · RORgamma (263-509) complexed with SRC2 and Compound 6 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P51449
Elsewhere: RCSB PDB 5YP6 · PDBe 5YP6 · UniProt P51449

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