Research workbench
Crystal structure of porcine delta coronavirus NSP9-N7
Analyse Crystal structure of porcine delta coronavirus NSP9-N7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YM8
- Type
- protein
- Length
- 189 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NSP9
- UniProt
- X2G6C4
- Pockets
- 3 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NSP9 | protein | 90 | 12% helix, 58% strand | X2G6C4 |
| B | NSP9 | protein | 99 | 11% helix, 61% strand | X2G6C4 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.46 | 0.76 | 26 | empty |
| 2 | 59 | 0.33 | 0.76 | 15 | empty |
| 3 | 52 | 0.27 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 601 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5YM8 · Crystal Structure of porcine delta coronavirus nsp9-N7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X2G6C4
- Elsewhere: RCSB PDB 5YM8 · PDBe 5YM8 · UniProt X2G6C4
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