Research workbench
Structure of GH113 beta-1,4-mannanase
Analyse Structure of GH113 beta-1,4-mannanase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YLH
- Type
- protein
- Length
- 618 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-1,4-mannanase
- UniProt
- K0J0N5
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-1,4-mannanase | protein | 309 | 38% helix, 20% strand | K0J0N5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 364 | 0.62 | 0.78 | 42 | empty |
| 2 | 242 | 0.57 | 0.78 | 33 | empty |
| 3 | 103 | 0.47 | 0.80 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1045 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5YLH · Structure of GH113 beta-1,4-mannanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K0J0N5
- Elsewhere: RCSB PDB 5YLH · PDBe 5YLH · UniProt K0J0N5
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