Research workbench
Crystal structure of OFD2 from schizosaccharomyces pombe at 1.80 a
Analyse Crystal structure of OFD2 from schizosaccharomyces pombe at 1.80 a in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YLB
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein P8A3.02C
- UniProt
- Q9UT12
- Ligands
- FE
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein P8A3.02C | protein | 187 | 21% helix, 37% strand | Q9UT12 |
Ligands and binding sites
- FE · Fe (III) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.54 | 0.81 | 30 | empty |
Compared structures
- 5YLB · Crystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UT12 · AlphaFold monomer V2.0 prediction for uncharacterized protein P8A3.02C (Q9UT12) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UT12
- Elsewhere: RCSB PDB 5YLB · PDBe 5YLB · UniProt Q9UT12
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