Research workbench
Crystal structure of the engineered nine-repeat puf domain in complex with cognate 9NT-RNA
Analyse Crystal structure of the engineered nine-repeat puf domain in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YKI
- Type
- protein + RNA
- Length
- 392 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pumilio homolog 1; RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3')
- UniProt
- Q14671
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pumilio homolog 1 | protein | 383 | 73% helix, 2% strand | Q14671 |
| C | RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3') | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–C · 1501 Ų buried · 60 hydrogen bonds · protein-nucleic
Compared structures
- 5YKI · Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA · the same entry in another collection · chain A against A, TM-score 1.00
- Q14671 · AlphaFold monomer V2.0 prediction for pumilio homolog 1 (Q14671) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14671
- Elsewhere: RCSB PDB 5YKI · PDBe 5YKI · UniProt Q14671
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