Research workbench
Crystal structure of drosophila numb ptb domain and pon peptide complex
Analyse Crystal structure of drosophila numb ptb domain and pon peptide complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YI8
- Type
- protein
- Length
- 162 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein numb; Pon peptide from partner of numb
- UniProt
- P16554, Q9W4I7
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein numb | protein | 136 | 32% helix, 42% strand | P16554 |
| B | Pon peptide from partner of numb | protein | 26 | 0% helix, 8% strand | Q9W4I7 |
Ligands and binding sites
- FMT · Formic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 742 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16554
- Every structure of UniProt Q9W4I7
- Elsewhere: RCSB PDB 5YI8 · PDBe 5YI8 · UniProt P16554 · UniProt Q9W4I7
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