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The crystal structure of staphylococcus aureus cnta in apo form

Analyse The crystal structure of staphylococcus aureus cnta in apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YH5
Type: protein
Length: 503 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nickel ABC transporter substrate-binding protein
UniProt: A0A068A9N4
Pockets: 3 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nickel ABC transporter substrate-binding protein	protein	503	30% helix, 23% strand	A0A068A9N4

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 3 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	874	0.71	0.76	72	EDO, PEG
2	203	0.64	0.83	32	empty
3	51	0.35	0.80	16	empty

Compared structures

5YH5 · The crystal structure of Staphylococcus aureus CntA in apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A068A9N4
Elsewhere: RCSB PDB 5YH5 · PDBe 5YH5 · UniProt A0A068A9N4

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